Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs9878464 chr3:136586506 C/G 0.000479 178 24.37 27.33 25.17 KM Plot
PCPG rs9880479 chr3:39237475 A/G 3.99E-7 175 21.98 25.53 25.28 KM Plot
PCPG rs9883980 chr3:80470996 C/T 0.000387 178 25.47 25.92 19.53 KM Plot
PCPG rs9892353 chr17:74704522 G/A 0.000173 175 25.97 14.63 13.5 KM Plot
PCPG rs9898569 chr17:80493953 C/T 4.82E-5 176 25.87 22.33 7.2 KM Plot
PCPG rs9900949 chr17:74698565 G/A 0.000171 177 26.27 17.1 13.5 KM Plot
PCPG rs9909030 chr17:75718552 A/G 4.17E-11 178 5.15 22.88 25.6 KM Plot
PCPG rs9910053 chr17:74667807 A/C 1.31E-6 171 25.4 24.88 10.28 KM Plot
PCPG rs9912538 chr17:80482018 C/T 4.46E-5 177 25.92 19.72 7.2 KM Plot
PCPG rs991333 chr3:80575616 T/G 6.94E-5 176 19.53 24.53 27.2 KM Plot
PCPG rs9922608 chr16:1693614 G/A 0 178 25.47 18.2 2.93 KM Plot
PCPG rs9922630 chr16:1723065 C/G 0 178 25.53 18.75 2.93 KM Plot
PCPG rs9924715 chr16:1676288 C/T 5.51E-5 176 25.28 22.77 19.83 KM Plot
PCPG rs9925164 chr16:1714749 T/C 0 178 25.53 18.75 2.93 KM Plot
PCPG rs9925938 chr16:1689227 G/T 0 178 25.4 22.77 2.93 KM Plot